Computational Biology @ University of Nebraska-Lincoln

Development of software technologies for biomedical research and applications.

Technologies
mysql, javascript, react, webgl
Topics
computational biology, real time, networks, image analysis, systems biology
Development of software technologies for biomedical research and applications.

Our group works at the interface of computer science, biology, and mathematics by applying computational approaches to the seas of data in biomedical research. One of the main interests of our group is the development of technologies to make large-scale computational approaches accessible and more collaborative to a wider scientific audience. Our recent web-based technology, Cell Collective, enables scientists from across the globe to construct and simulate large-scale computational models of biological systems in a highly collaborative fashion. This software enables biomedical researchers to study the dynamics of biological systems (e.g., cells) under both healthy and diseased conditions. Cell Collective provides a unique environment for real-time, interactive simulations to enable users to analyze and visualize the multitude of effects a disease-related mal-function can have on the rest of the cell.

Other technologies developed by our group include cost-effective mobile disease monitoring devices, interactive on-line tissue sample analysis, an interactive statistical analysis platform for teaching life sciences students about data analysis, etc.

Our group consists of computer scientists, biochemists, biologists, bioinformaticians, as well as mathematicians, creating an unique environment of diverse skills, integrated by a single interest point.

2016 Program

Successful Projects

Contributor
Znbiz
Mentor
David Tichy, Tom Helikar
Organization
Computational Biology @ University of Nebraska-Lincoln
Idea 1: Javascript/WebGL Component For Interactive Visualization Of Large-Scale Network Graphs.
This project will center around the development of additional optimization techniques to enable interactive visualization of very large networks, as...
Contributor
shubhamkmr
Mentor
Akram Mohammed
Organization
Computational Biology @ University of Nebraska-Lincoln
Interactive Platform for Statistical Computing
The goal of this project is to develop a web-based platform that enables anyone to perform various statistical computations in an easy-to-use,...
Contributor
joshim5
Mentor
Bhanwar Lal Puniya, Tom Helikar
Organization
Computational Biology @ University of Nebraska-Lincoln
Boolean-based Representations of Biological Systems
The goal of this project is to develop a model that can visualize biological networks as logic gate circuits, and vice-versa. In recent years,...
Contributor
Abdul Fatir
Mentor
Tom Helikar, Jiri Adamec
Organization
Computational Biology @ University of Nebraska-Lincoln
Mobile Based Blood Analysis
The aim of this project is to use the camera and processing power of modern day cell phones to develop an intuitive and user-friendly application for...
Contributor
ales.saska
Mentor
David Tichy
Organization
Computational Biology @ University of Nebraska-Lincoln
Idea 1 - Ales Saska
Javascript/WebGL component for interactive visualization of large-scale network graphs