Integrate structural variants calls in the tumor_pair pipeline from MUGQIC Pipeline
- Mentors
- Edouard Henrion, C3G_montreal
- Organization
- Canadian Centre for Computational Genomics (C3G) - Montreal node
The goal of this project is to implement additional steps in the tumor_pair pipeline in order to integrate Structural Variant detection in the analysis. Tools like Lumpy,Delly,SCoNEs and PopSV would be integrated as part of this project to extend the tumor_pair pipeline to include analysis of Structural variants like deletions, tandem duplications, inversions and translocations and also the estimation of Copy Number variation.