The goal of this project is to implement additional steps in the tumor_pair pipeline in order to integrate Structural Variant detection in the analysis. Tools like Lumpy,Delly,SCoNEs and PopSV would be integrated as part of this project to extend the tumor_pair pipeline to include analysis of Structural variants like deletions, tandem duplications, inversions and translocations and also the estimation of Copy Number variation.

Student

Tushar Dubey

Mentors

  • Edouard Henrion
  • C3G_montreal
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2016