I have wrote a set of thoughts expanding the original proposal "Interactive visualisation framework for genome mutations in gene and protein networks" to express my current understanding of the topic, my views and propositions.
The ideas expressed in the proposal are related to the general planning of the project as well to implementation of visualization engine specifically. Among others I propose use of "user defined layouts", clusterization, refer to pathway visualization in KEGG and mention alternative to graph-based visualization tools.
I hope to get feedback on this draft to know whether my current idea of this project is on track or whether I am thinking of something other than the author had in mind. I will appreciate any feedback.