Computational Biology @ University of Nebraska-Lincoln

Development of software technologies for biomedical research and applications.

Technologies
mysql, javascript, java, react, webgl
Topics
bioinformatics, computational biology, image analysis, systems biology, network biology
Development of software technologies for biomedical research and applications.

Our group works at the interface of computer science, biology, and mathematics by applying computational approaches to the seas of data in biomedical research. One of the main interests of our group is the development of technologies to make large-scale computational approaches accessible and more collaborative to a wider scientific audience. Our recent web-based technology, Cell Collective, enables scientists from across the globe to construct and simulate large-scale computational models of biological systems in a highly collaborative fashion. This software enables biomedical researchers to study the dynamics of biological systems (e.g., cells) under both healthy and diseased conditions. Cell Collective provides a unique environment for real-time, interactive simulations to enable users to analyze and visualize the multitude of effects a disease-related malfunction can have on the rest of the cell.

Other technologies developed by our organization include cost-effective mobile disease monitoring devices, interactive on-line tissue sample analysis, an interactive statistical analysis platform for teaching life sciences students about data analysis, etc.

Our group consists of computer scientists, biochemists, biologists, bioinformaticians, as well as mathematicians, creating an unique environment of diverse skills, integrated by a single interest point.

2017 Program

Successful Projects

Contributor
Venkata
Mentor
Aleš Saska, Tomas Helikar
Organization
Computational Biology @ University of Nebraska-Lincoln
Project Proposal-Javascript/WebGL Library For Interactive Visualization Of Large-Scale Network Graphs.
A brief description on the plan of action and my understanding of the visualization project.
Contributor
Renato Fabbri
Mentor
Aleš Saska, Tomas Helikar
Organization
Computational Biology @ University of Nebraska-Lincoln
Network Visualization Layouts
This proposal is focused in network visualization layouts. I intend to implement canonical algorithms for ccNetViz and to develop variations. Most...
Contributor
Abdul Fatir Ansari
Mentor
Tomas Helikar, Jiri Adamec
Organization
Computational Biology @ University of Nebraska-Lincoln
Mobile-Based Blood-Sample Image Analysis(iOS)
The aim of this project is to use the camera and processing power of modern day cell phones to develop an intuitive and user-friendly application for...
Contributor
Achilles Rasquinha
Mentor
Akram Mohammed, Tomas Helikar
Organization
Computational Biology @ University of Nebraska-Lincoln
CancerDiscover: a GUI for cancer prediction and biometric identification using microarray data
Problem As of today, CancerDiscover has a not-so-easy build and workflow for users to conduct microarray experiments. Moreover, the current setup...