In systems biology, it is very important to formalize the model for biological phenomenon and analyze based on this model basically constructed by ordinary differential equation(ODE). The model is normally described by SBML and there are several software tools to create the model easily. Regarding the analysis, this is considered as simulation, steady state analysis and parameter estimation. These methodologies are mathematically formalized and the library to analyze already exists. However, establishing the environment of analysis is difficult for biologists. Therefore, this is the obstacle to analyze ODE model easily. This project implement the web application to execute these analysis solving this problem. Web application does not require complicated establishment of analysis environment for users. This project removes the barrier for users to analyze ODE model.

Student

Takahiro Yamada

Mentors

  • Kaito Ii
  • Andreas Dräger
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2017