The project will be focused on development of extension for neo4j graph database for querying knowledge graphs storing molecular and chemical information. That would be implemented on top of neo4j-java-driver.

Task is to enable identification of entry points into the graph via exact/substructure/similarity searches (UC1). UC2 is closely related to UC1, but here the intention is to use chemical structures as limiting conditions in graph traversals originating from different entry points. Both use cases rely on the same integration of RDkit and Neo4j and will only differ in their CYPHER statements.

Organization

Student

Evgeny Sorokin

Mentors

  • Christian Pilger
  • Greg Landrum
close

2019