Department of Biomedical Informatics, Emory University
Biomedical research to advance healthcare
Biomedical research to advance healthcare
Biomedical Informatics is a multidisciplinary field that is motivated by our desire to improve diagnosis, clinical care, and human health, through novel computational approaches to use (and learn from) biomedical and clinical data. We use our expertise in computer science and informatics by developing various enabling tools, technologies, and algorithms to solve specific biomedical and clinical applications. And in doing so help advance our understanding of disease and treatment, and also develop useful software and applications. Members of the department work in a variety of areas that range from machine learning, healthcare middleware that leverages cloud computing, clinical information systems, clinically oriented image analysis, and biomedical knowledge modeling. The driving applications for the various ongoing projects include cancer research, organ transplant, HIV, medical imaging, radiation therapy, and clinical data analytics. All development work that is undertaken is free and open-source.
We have had a diverse set of successful GSoC projects in the past. In previous years, GSoC contributors have worked on diverse projects such as: geospatial systems for exploring microscopy environments that leveraged Hadoop; GPU accelerated pipelines for computational analysis of digitized biopsies; interactive visualization platforms for viewing massive images (>1GB); systems for data agnostic sharing of biomedical research datasets; Apache Drill based data integration and de-duplication platform for SQL and NoSQL databases; CNN based high throughput analysis of digitized biopsies; A GUI for Tensorflow; integrated architectures for biomedical data integration and federation; and information visualization of heterogeneous medical data. Many of these projects have been published in reputable journals and presented at major conferences. Some of the projects proved to be so successful that they were adopted in major national/international biomedical research initiatives.
2023 Program
Successful Projects
Contributor
Rahul Jagwani
Mentor
NAN LI, Mark Arnold, Tony Pan
Organization
Department of Biomedical Informatics, Emory University
An Integrated CONTROL-CORE experience
At present, all the Concore methods such as build, debug, run etc. are executed from CLI by user and Concore-editor does not serve the functionality...
Contributor
Parteek Goyal
Mentor
Pradeeban, Mark Arnold, Tony Pan
Organization
Department of Biomedical Informatics, Emory University
Developing Contribute Action
Concore is a lightweight framework for closed-loop peripheral neuromodulation control systems. Control-editor is a React-based frontend environment...
Contributor
Shivang Vijay
Mentor
Pradeeban, Mark Arnold, Mayuresh V. Kothare
Organization
Department of Biomedical Informatics, Emory University
A real-time computing support for concore.
To achieve real-time execution in Concore, one approach is to optimize the existing codebase. However, implementing the system with straightforward...
Contributor
Himanshu Kumar1
Mentor
PUNEET SHARMA, Tony Pan
Organization
Department of Biomedical Informatics, Emory University
A Methodology To Categorize Exam Series
DICOM is the global standard for managing and exchanging medical images and data but lacks a consistent series-naming scheme. I will use machine...
Contributor
Ioannis Valasakis
Mentor
Özgür Kara, Babak Mahmoudi
Organization
Department of Biomedical Informatics, Emory University
Develop a drag-and-drop GUI for deep learning experimentation
The aim is to develop a desktop application (GUI) that allows users to run their Deep Learning experiments that is integrated with PyTorch library...