Contributor
Justin Aronson

Increasing Support for Molecular Consequence Data in Genomic Standards


Mentors
Bob Dolin, Srikar Chamala
Organization
Global Alliance for Genomics and Health
Technologies
python
Topics
genomics, Data Conversion
Molecular consequences of genetic variants determine their impact. For example, the variant NM_001330311.2(DVL1):c.1594del is a frameshift variant whose frameshift causes Robinow syndrome. Constantly enhancing the ability of genetic standards to simplify the aggregation and use of molecular consequences will increase the power of these standards. This project aims to support this goal by modifying the vcf2fhir project and the FHIR Genomics reference implementation to incorporate molecular consequence data. It also involves assessing the FHIR Genomics specification to determine whether its modeling of molecular consequences can be improved.