caMicroscope

Toolkit for cancer imaging research

Technologies
python, javascript, mongodb, opencv, node
Topics
data visualization, image analysis, AI/ML, microscopy, dicom pathology
Toolkit for cancer imaging research
caMicroscope is a digital pathology data management, visualization and analysis platform. It consists of a set of web services to manage digital pathology images, associated clinical and imaging metadata, and human/machine generated annotations and markups. The image visualization client consists of HTML5 based web clients that support interactive rendering of the digitized image, and the creation and display of annotations and markups. In addition to the core caMicroscope digital pathology management framework, caMicroscope organization also consists of several other open source tools, in the domains of healthcare and big data. caMicroscope is used by several medical research organizations.

Projects

Contributor
cgdogan
Mentor
Birm, Tony Pan
Organization
caMicroscope
DICOM & BioFormats
My project goal was to add DICOM file support to caMicroscope, a Whole Slide Image viewer. The viewer backend (OpenSlide) didn't support DICOM, so we...
Contributor
Dung Do Tien
Mentor
NAN LI
Organization
caMicroscope
Machine Learning Training Assistant
To improve pathology data collection, caMicroscope has added specific tools for assisting with annotations and classifications. However, these tools...