Advancing global collaborative brain research

Technologies
python, javascript, c++, xml, jupyter
Topics
science, big data, neuroscience, brain modelling, bio/neuro image processing
Advancing global collaborative brain research

The International Neuroinformatics Coordinating Facility (INCF; www.incf.org) is an international organization launched in 2005, following a proposal from the Global Science Forum of the OECD. INCF was established to facilitate and promote the sharing of data and computing resources in the international neuroscience community, and to advance training in the field. A larger objective of INCF is to advance data reuse and reproducibility in brain research, by coordinating the development of Open, FAIR, and Citable tools and resources for neuroscience.

The global INCF community provides coordination of global neuroscience infrastructure through the development and endorsement of consensus-based standards and best practices and trains scientists, administrators, and students in using neuroinformatics tools and methods. We are developing a training platform and building the community to support it and its student communities.

INCF activities are open to all who can contribute to neuroinformatics at the international level. We have a global community of neuroscience researchers working on new and improved tools for all of neuroscience – enabling other researchers to make more and faster discoveries, and improving our understanding of the brain.

2019 Program

Successful Projects

Contributor
Emily Thomas
Mentor
Stephen Larson
Organization
INCF
16.4 Open Data for OpenWorm
OpenWorm is an attempt to build a biophysical simulation of the model organism C. elegans via assimilation of published data from a range of sources....
Contributor
Yijie Huang
Mentor
Petr Jezek
Organization
INCF
Web-based GUI for deep learning continuous workflows
This project is a continuous work for the GSoC2018 Dynamic Signal Processing Workflow Designer. The previous existing project is a Web-based GUI to...
Contributor
Mrinal Wahal
Mentor
Achilleas Koutsou, Michael Sonntag
Organization
INCF
Continuous Integration of Research Data
A GIN micro-service which allows the users to design efficient workflows for their work - probably by automating Snakemake, and build the workflows...
Contributor
Alexandra Livadas
Mentor
Christine Rogers
Organization
INCF
Improve LORIS Automated Testing
LORIS, or Longitudinal Online Research and Imaging System, is a research data platform (github.com/aces/LORIS) for neuroscience studies. It is a...
Contributor
Leevi Kerkelä
Mentor
Pilou Bazin, Julia
Organization
INCF
Implementing automatic white matter parcellation in Nighres
Nighres is an open-source Python package that enables high-resolution neuroimaging data to be easily and efficiently processed. Diffusion MRI is an...
Contributor
Simone L.
Mentor
Hannelore Aerts, Daniele Marinazzo, Lia D
Organization
INCF
Project: 4.3 The Virtual Brain (TVB) Demo Packages for clinical case studies reports
The project is to provide a set of demo packages, including sample python code and user-friendly webpages to clinical researchers for the...
Contributor
Aleksandra Teska
Mentor
Marcel Stimberg
Organization
INCF
Model Fitting
Brian 2 is the new version of Brian software. In 2010 the ModelFitting toolbox was developed for the original version...
Contributor
Stefan Dvoretskii
Mentor
Bradly Alicea
Organization
INCF
Modeling Neural Development with Braitenberg Vehicles
This project is about building an embodied cognitive simulation, i.e. that in which robots we call vehicles have a body and a simple "mind",...
Contributor
Monica Yao
Mentor
Kirstie Whitaker
Organization
INCF
"Future-Proofing" Tedana
For tedana to expand, more extensive test cases are needed. A new contributor could have introduced an unknown bug into the codebase, but without...
Contributor
Ajay Subramanian
Mentor
Thomas Nowotny, James Knight
Organization
INCF
Deep Learning in Spiking Neural Networks using GeNN
Building a library that enables conversion of Tensorflow deep neural network models to corresponding Spiking Neural Network architectures, with...
Contributor
Hou Chen
Mentor
Surbhit Wagle
Organization
INCF
Running FindSim experiments on cloud servers
The project is about implementing the computing extensive FindSim program on a cloud server and building communication between the web server and the...
Contributor
Vinay Varma Nadimpalli
Mentor
Bradly Alicea
Organization
INCF
Semantic Image Processing for Developmental Data Science.
ImageJ is an OpenSource image processing tool written in Java which has been extremely helpful in the analysis of scientific images especially...
Contributor
Shinjan Mitra
Mentor
Alex Dewar
Organization
INCF
Simulating bob_robotics models using Gazebo
Brains on Board (http://brainsonboard.co.uk) is an inter-university project with the aim of developing an autonomous flying robot with the learning...
Contributor
Lakshya A Agrawal
Mentor
Dimiter Prodanov
Organization
INCF
Maxima to Python Translator
Maxima is a computer algebra system, which has been growing for the past 40 years. However, given the growing use of Python in Neuroscience, under...
Contributor
Nakul Bharti
Mentor
Paula Popa, Lia D
Organization
INCF
Visualize a large Connectome in 3D using HTML5
Data visualization plays a crucial role in TVB's neuroinformatics platform, and a Structural Connectivity (connectome) is a core datatype, modelling...
Contributor
Jaideep Seth
Mentor
Arnab Banerjee, Mark Watts
Organization
INCF
Project 16.1: P2P File Sharing framework for PyOpenWorm.
The PyOpenWorm data management tool aids in creating, storing, and sharing information about Caenorhabditis elegans and about the evidence...
Contributor
Ruslan Yermakov
Mentor
Kirstie Whitaker
Organization
INCF
Producing publication-ready brain network analysis results and visualisations from the command line
Many scientists around the world perform structural network analyses on the MRI data during neuroscience experiments or studies. Scona was designed...